Unfortuntely not.
We're using ispmgr with CentOS (5.X or 6.X) and if we set php as cgi, ispmgr generates user's php.ini with only two lines: sendmail_path and session.save_path. Everything else is generate from php default values and doesn't depends on /etc/php.ini. So it will be cool to create an skel for user's php.ini.
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