Hello,
I have tried to reproduce the issue. I created email domain "mail.me" and some subdomains. Then I initiated user import. And there were no errors with email domains despite finding a subdomain before processing the main domain.
Oct 22 08:48:46 [38544:0] INFO ... usrparam
Oct 22 08:48:46 [38544:0] INFO ... deletezonesonslaves
Oct 22 08:48:46 [38544:0] INFO ... emaildomain
Oct 22 08:48:46 [38544:0] INFO Restoring 'admin.mail.me'...
Oct 22 08:48:46 [38544:0] INFO Restoring 'boris.mail.me'...
Oct 22 08:48:47 [38544:0] INFO Restoring 'mail.me'...
Oct 22 08:48:47 [38544:0] INFO Restoring 'mail.you'...
Oct 22 08:48:48 [38544:0] INFO ... email
In your log I see the error: Failed to restore 'example.com': Failed to run function emaildomain.edit: code=2 Already exists . Skip it
So, emaildomain exists on new server. That is why example.com and subdomains were not imported.
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