I've just cheked it. filemgr.enc is created automatically in the script: /usr/local/ispmgr/sbin/ISPmanager-install.sh. Perhaps, the problem is in your method of installation. There are to ways to install ISPmanager. The first one is to download and run install.sh (the best way). The second one is to download install.tgz and run /usr/local/ispmgr/sbin/ispinstall (In this case the problem can appear).
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